| |
1.
Data Storage: A dedicated server for the storage/access
for the users DNA sequence and microarray data generated by
the molecular biology and genomics core respectively. |
| |
a.
Accessing
the Bioinformatics Core Data Server
b. Data
Server Access Request
c. Public Data |
| 2.
Microarray Data Analysis: Microarray data analysis can
be performed on two stand-alone workstations with the following
software available for use. Please use the following form when requesting assistance from the Core for analysis. |
| |
a.
Schedule Workstation Use for Data Analysis using the Resource
Scheduler
b. GeneSifter.net |
| |
|
i.
Request GeneSifter.net account
ii. Access GeneSifter.net |
| |
c.
GeneSpring
(Silicon Genetics) |
| |
|
i. How to for GeneSpring (Power Point File) |
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d.
GCOS
(Affymetrix) |
| |
e.
PathwayAssist
(Iobion/Stratagene) |
| |
f.
VectorNTI
(Informax) |
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g.
VectorExpression
(Informax) |
| |
h.
TM4 Package
(TIGR) |
| |
i.
Eisen Software
(Michael Eisen, UC Berkeley) |
| |
Manuals
and other information are available here. |
| 3.
DNA/Protein Sequence Analysis: SeqWeb, GCG Wisconsin
package and EMBOSS are on the core servers and can be accessed
over the web for DNA/Protein sequence analysis. Alternatively,
the stand-alone terminals have copies of VectorNTI DNA/Protein
analysis package for additional DNA/Protein analysis tools.
|
| |
a.
GCG/SEQWEB
Account Request
b. Access
EMBOSS |
| 4.
Links: The Core web site has numerous links and additional
resources for microarray, DNA/protein analysis and databases. |
| 5.
Computational Resources: In the near future the Core
will be able to provide limited usage of an 8-node Macintosh
G5-based cluster for computationally-intensive data analysis. |
6.
WSU Database Resources: Several WSU made databases exist for public use,
please use the following links to access them.
Athena Database: Pantheon provides visualization and data-mining of Arabidopsis thaliana promoter sequences. (Prof. John Wyrick, WSU)
ORFeome Database: The Sinorhizobium meliloti genomics project. (Prof. Mike Kahn, WSU)
Genome Database for Rosaceae: The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database. GDR contains comprehensive data of the genetically anchored peach physical map, annotated EST databases of peach, almond and strawberry, Rosaceae maps and markers and all publicly available Rosaceae sequences. Annotations of ESTs include contig assembly, putative function, simple sequence repeats, and anchored position to the peach physical map where applicable. (Prof. Dorrie Main, WSU) |
